Release, Citation And Help
Public v1.0 release-candidate identity
NMD-VCell Research Workbench v1.0.0-database-resource
These are separate version axes. None is a synonym for another. This build is a formal v1.0 candidate, not a formal v1.0 release.
v1.0.0-database-resource
Public evidence and decision-state release.
25 July 2026
Latest included evidence-state date.
1.1
Typed canonical API and missing-value semantics.
ridge-safe-v2.3
Same-HepG2 benchmark only; raw direction and disease-context validity remain bounded.
repeated-fold-v2.2
Repeated balanced-fold estimator and uncertainty object.
EA-20260729-15
Research Workbench beta 3.5; presentation can change without changing evidence.
v1 final-release freeze gate
Internal gates pass; external authorization remains pending
Open the rendered v1 gate · Inspect JSON · Read database-paper readiness.
Database-paper target
What v1.0 may claim after external gates pass
versioned, citable, FAIR-oriented neuromuscular evidence workbench with static typed API, relational download, research-object registry, provenance, checksums and explicit claim boundaries
Claims that remain unauthorized
- validated DMD disease predictor
- therapeutic response predictor
- clinical decision-support platform
- treatment-prioritization engine
Prediction boundary
Disease prediction is gated separately from database release
P0 prediction infrastructure only
P0 means infrastructure only: schemas, empty registry, benchmark and outcome board.
P1 research use dmd perturbation response prediction
P1 requires independent disease-relevant perturbation validation and prospective outcomes.
P2 clinical prediction locked
P2 is locked and outside this release.
Open the prediction-readiness page · Inspect machine-readable gate.
v1.0 handoff status
All currently automatable release gates pass. Four external gates remain and require author or institutional action; they are not scientific-analysis failures.
Mint a DOI for both locked layers
The deposited filename, size and SHA-256 must match both the analysis core and Evidence Atlas overlay exactly.
Approve the data licence
The institution-approved data-licence identifier and approval reference remain external inputs.
Approve the code licence
The institution-approved code-licence identifier and text remain external inputs.
Approve public maintainer metadata
Name, institution and contact are published only after explicit author authorization.
Completing the input contract does not submit, deposit or publish anything automatically. It only makes the remaining authorization state auditable.
v1.0.0-database-resource
Research Workbench identity candidate; formal v1.0 locked.
Public site deployed
Free access, no login.
Pending archive deposition
The final archive deposition is deliberately deferred until the last release freeze.
Submission-readiness gates
- PASSBuild integrity
Generated pages, APIs, SQLite, internal links and checksums are verified automatically.
- PENDINGArchive DOI
Deposit the unchanged canonical archive, then insert and freeze the DOI.
- PENDINGInstitution-approved licence
No licence is asserted until institutional approval is supplied.
- PENDINGMaintainer/contact metadata
Author and contact details are intentionally unchanged in this website upgrade.
Immutable object identity
| Canonical archive | nmd_vcell_database_resource_v0.8.1-v24r1-20260722.tar.gz 9,677,910 bytes b88a3b9f1ae44b48d6ea3c2a568626229cc93f94d539b8ea30f55534aae41f36 |
|---|---|
| SQLite database | nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite 37,122,048 bytes 874377d932b67b8ce3254db27ec9f483db6d9a11d90a929e7369ce6eb131ef27Object ID: FILE:SQLITE:v0.9.2:schema1.1:20260725Website source: multipart reference at downloads/large_assets/nmd_vcell_sqlite_v0.9.2_schema1.1_20260725.sqlite/README.txt |
Citation and reuse routes
Use the resource version, access date, public URL and—after deposition—the DOI. Until then, cite the public URL and explicitly state that the DOI is pending.
Four guided tutorials · Maintenance policy · Changelog · Release identity JSON · Claim lock TSV · Claim boundary
Post-4.16i Public Release Boundary
Post-4.16i public website boundary: Frangieh is retained as schema-level independent-study denominator evidence only. The locked all-55-target endpoint found NO_DIRECTIONAL_TRANSFER_SUPPORT. Schema eligibility is not endpoint support. The public website is deployed; however, the manuscript remains not DOI-backed and not submission-authorized.