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      "gzip_validation_status": "PASS",
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  "scientific_boundary": "L1-L2 plus selected explicitly bounded L3 context/structure records; same-HepG2 benchmark evidence and GSE293514 matrix structure do not establish muscle perturbation validity, target validation, therapeutic efficacy, safety, or clinical utility",
  "v27_test": "OUT_OF_SCOPE_AND_SEALED"
}
